SAMPLING DESIGN AND BIAS IN DNA-BASED CAPTURE–MARK–RECAPTURE POPULATION AND DENSITY ESTIMATES OF GRIZZLY BEARS

2004 ◽  
Vol 68 (3) ◽  
pp. 457-469 ◽  
Author(s):  
JOHN BOULANGER ◽  
BRUCE N. MCLELLAN ◽  
JOHN G. WOODS ◽  
MICHAEL F. PROCTOR ◽  
CURTIS STROBECK
1996 ◽  
Vol 23 (3) ◽  
pp. 305 ◽  
Author(s):  
M Lampo ◽  
P Bayliss

The cane toad (Bufo marinus) has received considerable attention because of its rapid spread in Australia and the potential threat it may represent to native species. Although the introduction of pathogens from native populations is now being considered to control this species, population estimates based on comparable methods that demonstrate that native populations are in fact less dense than the introduced ones are not available. Accurate population estimates are necessary to evaluate potential techniques for the control of the cane toad. We estimated population densities of cane toads over a wide range of habitat types and climate conditions by means of mark-recapture data. The capture history and location of toads each night were analysed to explore the validity of some of the assumptions of mark-recapture models. Because migrations, deaths and recruitment over three nights appear to be unimportant, populations may be legitimately regarded as closed for that period. However, cane toads seem highly sensitive to disturbance effects due to trapping andlor handling. Consequently, density estimates based on removal methods seem the most reliable because they are not sensitive to handling and trapping effects. Similarly, analyses of residuals of regressions between 1-night counts and density estimates suggested that toad nightly activity is affected by the air temperature during sampling. However, only 60% of the variation in estimated densities can be predicted by 1-night counts and air temperature. Estimates of population density over a wide range of habitats in South America were one order of magnitude lower than estimates in Australia. We speculate on the possible factors that may account for the lower densities in populations in the native range of the species.


2008 ◽  
Vol 35 (7) ◽  
pp. 695 ◽  
Author(s):  
Laura B. Hanson ◽  
James B. Grand ◽  
Michael S. Mitchell ◽  
D. Buck Jolley ◽  
Bill D. Sparklin ◽  
...  

Closed-population capture–mark–recapture (CMR) methods can produce biased density estimates for species with low or heterogeneous detection probabilities. In an attempt to address such biases, we developed a density-estimation method based on the change in ratio (CIR) of survival between two populations where survival, calculated using an open-population CMR model, is known to differ. We used our method to estimate density for a feral pig (Sus scrofa) population on Fort Benning, Georgia, USA. To assess its validity, we compared it to an estimate of the minimum density of pigs known to be alive and two estimates based on closed-population CMR models. Comparison of the density estimates revealed that the CIR estimator produced a density estimate with low precision that was reasonable with respect to minimum known density. By contrast, density point estimates using the closed-population CMR models were less than the minimum known density, consistent with biases created by low and heterogeneous capture probabilities for species like feral pigs that may occur in low density or are difficult to capture. Our CIR density estimator may be useful for tracking broad-scale, long-term changes in species, such as large cats, for which closed CMR models are unlikely to work.


2009 ◽  
Vol 36 (5) ◽  
pp. 361 ◽  
Author(s):  
Karl Vernes ◽  
Melissa Freeman ◽  
Brad Nesbitt

Estimating the density of large, feral species such as wild horses at landscape scales can present a logistical hurdle for wildlife managers attempting to set density-based management targets. We undertook aerial surveys of wild horses by using a helicopter in Guy Fawkes River National Park in north-eastern New South Wales across 3 years to determine whether meaningful density estimates could be obtained efficiently by a mark–recapture technique based on recognition of individual horses. Horse groups photographed from the air on the first of two surveys conducted each year were ‘marked’ on the basis of a unique combination of colours and natural markings, and ‘recaptured’ if they were photographed and identified on the second survey. Population size was estimated with the program MARK using a range of population estimators; however, because horses appeared to be evading detection on the second survey of each year, we chose a final estimation model that accounted for detection shyness in the study species. In 2005, the density estimate was 3.8 horses per km2 (upper and lower 95% CL = 3.5–5.7 horses per km2). Following horse control in these catchments, the estimate in 2007 was 2.3 horses per km2 (upper and lower 95% CL = 2.1–3.4 horses per km2), and this change in density can be accounted for by the known number of horses removed from the survey area between survey periods. Overall, the technique proved useful for estimating densities of wild horses in deeply dissected gorge country where other estimation techniques (such as line transects) are not practical; however, low recapture rates in one of the years of the study shows that the technique may not always be applicable. Our technique should also be suitable for surveying other large mammals with broad ranges in open environments, provided recognition of individuals from unique marks is possible.


Ursus ◽  
2006 ◽  
Vol 17 (2) ◽  
pp. 149-158 ◽  
Author(s):  
John Boulanger ◽  
Michael Proctor ◽  
Stefan Himmer ◽  
Gordon Stenhouse ◽  
David Paetkau ◽  
...  

2020 ◽  
Author(s):  
Gates Dupont ◽  
J. Andrew Royle ◽  
Muhammad Ali Nawaz ◽  
Chris Sutherland

AbstractSpatial capture-recapture (SCR) has emerged as the industry standard for estimating population density by leveraging information from spatial locations of repeat encounters of individuals. The precision of density estimates depends fundamentally on the number and spatial configuration of traps. Despite this knowledge, existing sampling design recommendations are heuristic and their performance remains untested for most practical applications. To address this issue, we propose a genetic algorithm that minimizes any sensible, criteria-based objective function to produce near-optimal sampling designs. To motivate the idea of optimality, we compare the performance of designs optimized using three model-based criteria related to the probability of capture. We use simulation to show that these designs out-perform those based on existing recommendations in terms of bias, precision, and accuracy in the estimation of population size. Our approach allows conservation practitioners and researchers to generate customized and improved sampling designs for wildlife monitoring.


2004 ◽  
Vol 82 (8) ◽  
pp. 1267-1277 ◽  
Author(s):  
J Boulanger ◽  
S Himmer ◽  
C Swan

We used DNA sampling and mark–recapture modeling to estimate population trend(s), population size, and the demographic response of a coastal British Columbia grizzly bear population (Ursus arctos L., 1758) to low salmon escapement levels from 1998 to 2002. We contrasted the demography of three sampling areas in response to temporal and spatial variation in salmon availability. Population trend (λ) estimates suggested that salmon availability was too low in the first 2 years of the study to sustain grizzly bear populations. One of the sampling areas exhibited higher levels of salmon availability in later years of the study, leading to increased rates of addition. Apparent survival rates increased in all areas potentially as a result of increased salmon availability. Joint interpretation of λ and superpopulation estimates allowed for the assessment of whether salmon availability levels were high enough to sustain current population sizes of grizzly bears on salmon streams. This study illustrates how joint modeling of separate sampling areas can be used to assess spatial variation in population demography and population trends, as well as increase precision of estimates for individual sampling areas. It also illustrates how DNA mark–recapture can be used as a methodology to explore the effects of changes in environmental conditions on population demography and population trend of grizzly bears or of other wildlife species.


2008 ◽  
Vol 18 (3) ◽  
pp. 577-589 ◽  
Author(s):  
John Boulanger ◽  
Katherine C. Kendall ◽  
Jeffrey B. Stetz ◽  
David A. Roon ◽  
Lisette P. Waits ◽  
...  

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